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154
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WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
15 years 12 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
157
Voted
WABI
2004
Springer
15 years 12 months ago
Local Search Heuristic for Rigid Protein Docking
Abstract. We give an algorithm that locally improves the fit between two proteins modeled as space-filling diagrams. The algorithm defines the fit in purely geometric terms and...
Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunne...
158
Voted
WABI
2004
Springer
15 years 12 months ago
Chaining Algorithms for Alignment of Draft Sequence
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
Mukund Sundararajan, Michael Brudno, Kerrin Small,...
CLUSTER
2003
IEEE
15 years 12 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
161
Voted
CSB
2003
IEEE
101views Bioinformatics» more  CSB 2003»
15 years 12 months ago
Stochastic Stage-structured Modeling of the Adaptive Immune System
We have constructed a computer model of the cytotoxic T lymphocyte (CTL) response to antigen and the maintenance of immunological memory. Because immune responses often begin with...
Dennis L. Chao, Miles P. Davenport, Stephanie Forr...