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DNA
2004
Springer
15 years 12 months ago
Parallelism in Gene Assembly
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organisms. This process is fascinatin...
Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenber...
DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
15 years 12 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
DNA
2004
Springer
15 years 12 months ago
Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly
Most DNA computing algorithms for mathematical problems start with combinatorial generation of an initial pool. Several methods for initialpool generation have been proposed, inclu...
Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak...
DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
15 years 12 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold
ECAI
2004
Springer
15 years 12 months ago
Preferences for Queries in a Mediator Approach
The problem of integrating relevant information obtained from multiple heterogeneous sources is a complex task, with which biologists are now faced. In this paper, we address the p...
Alain Bidault, Sarah Cohen Boulakia, Christine Fro...