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WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
16 years 1 days ago
Pattern Identification in Biogeography
—Identifying common patterns among area cladograms that arise in historical biogeography is an important tool for biogeographical inference. We develop the first rigorous formali...
Ganeshkumar Ganapathy, Barbara Goodson, Robert K. ...
WABI
2005
Springer
132views Bioinformatics» more  WABI 2005»
16 years 1 days ago
Perfect Sorting by Reversals Is Not Always Difficult
—We propose new algorithms for computing pairwise rearrangement scenarios that conserve the combinatorial structure of genomes. More precisely, we investigate the problem of sort...
Sèverine Bérard, Anne Bergeron, Cedr...
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
16 years 1 days ago
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
Phylogenetic tree searching algorithms often produce thousands of trees which biologists save in Newick format in order to perform further analysis. Unfortunately, Newick is neithe...
Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nel...
WABI
2005
Springer
16 years 1 days ago
Rotamer-Pair Energy Calculations Using a Trie Data Structure
Abstract. Protein design software places amino acid side chains by precomputing rotamer-pair energies and optimizing rotamer placement. If the software optimizes by rapid stochasti...
Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
WABI
2005
Springer
16 years 1 days ago
Minimum Recombination Histories by Branch and Bound
Recombination plays an important role in creating genetic diversity within species, and inferring past recombination events is central to many problems in genetics. Given a set M o...
Rune B. Lyngsø, Yun S. Song, Jotun Hein