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WABI
2007
Springer
16 years 20 days ago
Bringing Folding Pathways into Strand Pairing Prediction
Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
WABI
2007
Springer
157views Bioinformatics» more  WABI 2007»
16 years 20 days ago
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
Abstract. Parameter estimation of large bio-pathway models is an important and difficult problem. To reduce the prohibitive computational cost, one approach is to decompose a large...
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S...
WIA
2007
Springer
16 years 20 days ago
Analyzing Ambiguity of Context-Free Grammars
It has been known since 1962 that the ambiguity problem for context-free grammars is undecidable. Ambiguity in context-free grammars is a recurring problem in language design and p...
Claus Brabrand, Robert Giegerich, Anders Mø...
AUIC
2006
IEEE
16 years 19 days ago
Visualising phylogenetic trees
• This paper describes techniques for visualising pairs of similar trees. Our aim is to develop ways of presenting the information so as to highlight both the common structure of...
Wan Nazmee Wan Zainon, Paul R. Calder
CBMS
2006
IEEE
16 years 19 days ago
Oasis: A Mapping and Integration Framework for Biomedical Ontologies
More and more ontologies are emerging across bioinformatics domains to represent and define domain knowledge, such as gene ontology, anatomy ontology and disease ontology. To inte...
Guang-Lei Song, Yu Qian, Ying Liu, Kang Zhang