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DNA
2009
Springer
185views Bioinformatics» more  DNA 2009»
16 years 1 months ago
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots
Knowledge of energy barriers between pairs of secondary structures for a given DNA or RNA molecule is useful, both in understanding RNA function in biological settings and in desig...
Ján Manuch, Chris Thachuk, Ladislav Stacho,...
DNA
2009
Springer
100views Bioinformatics» more  DNA 2009»
16 years 1 months ago
Self-assembly of the Discrete Sierpinski Carpet and Related Fractals
It is well known that the discrete Sierpinski triangle can be defined as the nonzero residues modulo 2 of Pascal’s triangle, and that from this definition one can easily const...
Steven M. Kautz, James I. Lathrop
GCB
2009
Springer
141views Biometrics» more  GCB 2009»
16 years 1 months ago
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series
: A wealth of time series of microarray measurements have become available over recent years. Several two-sample tests for detecting differential gene expression in these time seri...
Oliver Stegle, Katherine J. Denby, David L. Wild, ...
GCB
2009
Springer
105views Biometrics» more  GCB 2009»
16 years 1 months ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler
ICIC
2009
Springer
16 years 1 months ago
A Method for Multiple Sequence Alignment Based on Particle Swarm Optimization
Sequence Alignment is a basic information disposal method in Bioinformatics. However, it is difficult to deal with multiple sequence alignment problem(MSA). In this paper, an impro...
Fasheng Xu, Yuehui Chen