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DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
16 years 23 days ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
ICALP
2007
Springer
16 years 23 days ago
Sharp Tractability Borderlines for Finding Connected Motifs in Vertex-Colored Graphs
We study the problem of finding occurrences of motifs in vertex-colored graphs, where a motif is a multiset of colors, and an occurrence of a motif is a subset of connected vertic...
Michael R. Fellows, Guillaume Fertin, Danny Hermel...
ICDM
2006
IEEE
161views Data Mining» more  ICDM 2006»
16 years 19 days ago
Hierarchical Density Shaving: A clustering and visualization framework for large biological datasets
In many clustering applications for bioinformatics, only part of the data clusters into one or more groups while the rest needs to be pruned. For such situations, we present Hiera...
Gunjan Gupta, Alexander Liu, Joydeep Ghosh
DNA
2005
Springer
166views Bioinformatics» more  DNA 2005»
16 years 4 days ago
A Microfluidic Device for DNA Tile Self-assembly
In order to self-assemble desired DNA nanostructure, it is necessary to suppress assembly errors caused by fluctuations of temperature and concentration. We propose a microfluidic ...
Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi...
GECCO
2005
Springer
112views Optimization» more  GECCO 2005»
16 years 3 days ago
A multiple objective evolutionary algorithm for multiple sequence alignment
The problem of multiple sequence alignment is important for bioinformatics. This problem is widely studied and a popular tool to solve this problem is Clustal X. This work introdu...
Pasut Seeluangsawat, Prabhas Chongstitvatana