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CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
15 years 10 months ago
Minimum Entropy Clustering and Applications to Gene Expression Analysis
Clustering is a common methodology for analyzing the gene expression data. In this paper, we present a new clustering algorithm from an information-theoretic point of view. First,...
Haifeng Li, Keshu Zhang, Tao Jiang
CSB
2004
IEEE
173views Bioinformatics» more  CSB 2004»
15 years 10 months ago
Gene Ontology Friendly Biclustering of Expression Profiles
The soundness of clustering in the analysis of gene expression profiles and gene function prediction is based on the hypothesis that genes with similar expression profiles may imp...
Jinze Liu, Wei Wang 0010, Jiong Yang
CSB
2004
IEEE
103views Bioinformatics» more  CSB 2004»
15 years 10 months ago
Identifying MicroRNAs in Plant Genomes
The ability to control gene expression during development in plants could be used for improving crop yields, resistance to disease, and environmental adaptability. It has been sug...
Christopher Maher, Marja Timmermans, Lincoln Stein...
CSB
2004
IEEE
108views Bioinformatics» more  CSB 2004»
15 years 10 months ago
Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA
Our previous work to accelerate phylogeny inference using HW/SW(Hardware/Software) co-design has recently been extended to a more powerful embedded computing platform. In this pla...
Terrence S. T. Mak, Kai-Pui Lam
CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
15 years 10 months ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...