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BIBM
2008
IEEE
159views Bioinformatics» more  BIBM 2008»
16 years 1 months ago
Probe Design for Compressive Sensing DNA Microarrays
Abstract—Compressive Sensing Microarrays (CSM) are DNAbased sensors that operate using group testing and compressive sensing (CS) principles. In contrast to conventional DNA micr...
Wei Dai, Olgica Milenkovic, Mona A. Sheikh, Richar...
BIBM
2008
IEEE
134views Bioinformatics» more  BIBM 2008»
16 years 1 months ago
New Approaches to Compare Phylogenetic Search Heuristics
We present new and novel insights into the behavior of two maximum parsimony heuristics for building evolutionary trees of different sizes. First, our results show that the heuris...
Seung-Jin Sul, Suzanne Matthews, Tiffani L. Willia...
BIBM
2008
IEEE
111views Bioinformatics» more  BIBM 2008»
16 years 1 months ago
Estimating Regulatory Associations of Genomic Loci and Biological Pathways in Lymphoblastoid Cells
Genetical genomics has been established to study genetic variation of gene expression. It treats transcript expression as a quantitative trait and identifies putative regulatory l...
Jung Hoon Woo, Eunjee Lee, Sung-Bum Cho, Ju Han Ki...
BIBM
2008
IEEE
142views Bioinformatics» more  BIBM 2008»
16 years 1 months ago
Using Global Sequence Similarity to Enhance Biological Sequence Labeling
Identifying functionally important sites from biological sequences, formulated as a biological sequence labeling problem, has broad applications ranging from rational drug design ...
Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasa...
BIBM
2008
IEEE
141views Bioinformatics» more  BIBM 2008»
16 years 1 months ago
Protein-Protein Interaction Network Alignment by Quantitative Simulation
We adapt a network simulation algorithm called quantitative simulation (QSim) for use in the alignment of biological networks. Unlike most network alignment methods, QSim finds l...
Perry Evans, Ted Sandler, Lyle H. Ungar