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» Bioinformatics and biological reality
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WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
15 years 12 months ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
WABI
2005
Springer
107views Bioinformatics» more  WABI 2005»
15 years 12 months ago
Linear Time Algorithm for Parsing RNA Secondary Structure
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
Baharak Rastegari, Anne Condon
WABI
2005
Springer
124views Bioinformatics» more  WABI 2005»
15 years 12 months ago
Reconstructing Metabolic Networks Using Interval Analysis
Recently, there has been growing interest in the modelling and simulation of biological systems. Such systems are often modelled in terms of coupled ordinary differential equation...
Warwick Tucker, Vincent Moulton
DNA
2004
Springer
15 years 11 months ago
DNA Hybridization Catalysts and Catalyst Circuits
Practically all of life’s molecular processes, from chemical synthesis to replication, involve enzymes that carry out their functions through the catalysis of metastable fuels in...
Georg Seelig, Bernard Yurke, Erik Winfree
VLDB
2004
ACM
143views Database» more  VLDB 2004»
15 years 11 months ago
GPX: Interactive Mining of Gene Expression Data
Discovering co-expressed genes and coherent expression patterns in gene expression data is an important data analysis task in bioinformatics research and biomedical applications. ...
Daxin Jiang, Jian Pei, Aidong Zhang