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AINA
2006
IEEE
16 years 13 days ago
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly impr...
Yixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen
CIBCB
2006
IEEE
16 years 13 days ago
Prediction of the Number of Helices for the Twilight Zone Proteins
– Protein structure prediction is one of the core research areas in bioinformatics. This paper addresses the protein secondary structure prediction problem for the twilight zone ...
Kanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor,...
INFOSCALE
2006
ACM
16 years 10 days ago
Scalable hardware accelerator for comparing DNA and protein sequences
Abstract— Comparing genetic sequences is a well-known problem in bioinformatics. Newly determined sequences are being compared to known sequences stored in databases in order to ...
Philippe Faes, Bram Minnaert, Mark Christiaens, Er...
HIPC
2005
Springer
15 years 12 months ago
Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors
Graph theoretic problems are representative of fundamental computations in traditional and emerging scientific disciplines like scientific computing, computational biology and b...
David A. Bader, Kamesh Madduri
SFM
2005
Springer
243views Formal Methods» more  SFM 2005»
15 years 12 months ago
Hermes: Agent-Based Middleware for Mobile Computing
Hermes is a middleware system for design and execution of activity-based applications in distributed environments. It supports mobile computation as an application implementation s...
Flavio Corradini, Emanuela Merelli