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CIKM
2005
Springer
15 years 12 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
WABI
2005
Springer
15 years 12 months ago
Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds
d Abstract] Tamir Tuller , Efrat Oron , Erez Makavy , Daniel A. Chamovitz † , and Benny Chor ‡ Tel-Aviv University, Tel-Aviv 69978, Israel. Abstract. We study gene expression d...
Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. C...
WABI
2004
Springer
15 years 11 months ago
A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns
Abstract. Contact maps are a model to capture the core information in the structure of biological molecules, e.g., proteins. A contact map consists of an ordered set ¡ of elements...
Jens Gramm
CSB
2003
IEEE
113views Bioinformatics» more  CSB 2003»
15 years 11 months ago
An Optimal DNA Segmentation Based on the MDL Principle
: The biological world is highly stochastic and inhomogeneous in its behaviour. There are regions in DNA with high concentration of G or C bases; stretches of sequences with an abu...
Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankows...
ISMB
2007
15 years 8 months ago
Computational prediction of host-pathogen protein-protein interactions
Our major effort in this reporting period comprised functional genomic studies of key genes for carbon metabolite and nodulation/nitrogen fixation in Sinorhizobium meliloti, compar...
Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral