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» Bioinformatics and biological reality
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CSB
2002
IEEE
221views Bioinformatics» more  CSB 2002»
15 years 11 months ago
DNA Sequence Compression Using the Burrows-Wheeler Transform
-- We investigate off-line dictionary oriented approaches to DNA sequence compression, based on the Burrows-Wheeler Transform (BWT). The preponderance of short repeating patterns i...
Donald A. Adjeroh, Yong Zhang, Amar Mukherjee, Mat...
BIBE
2000
IEEE
15 years 10 months ago
Reconstructing Specimens using DIC Microscope Images
—Differential interference contrast (DIC) microscopy is a powerful visualization tool used to study live biological cells. Its use, however, has been limited to qualitative obser...
Farhana Kagalwala, Takeo Kanade
CSB
2005
IEEE
132views Bioinformatics» more  CSB 2005»
15 years 8 months ago
A Fast Shotgun Assembly Heuristic
Genome sequencing opened a new era in genetics allowing the study of genomes at the nucleotide level. However, the chosen method of sequencing produced large numbers of nucleotide...
Christopher Wilks, Sami Khuri
WABI
2010
Springer
141views Bioinformatics» more  WABI 2010»
15 years 4 months ago
An Experimental Study of Quartets MaxCut and Other Supertree Methods
Although many supertree methods have been developed in the last few decades, none has been shown to produce more accurate trees than the popular Matrix Representation with Parsimon...
M. Shel Swenson, Rahul Suri, C. Randal Linder, Tan...
BIOCOMP
2009
15 years 4 months ago
Simulating Spatial Partial Differential Equations with Cellular Automata
Abstract-- Spatial partial differential equations are commonly used to describe systems of biological entities, such as patterns created by desert vegetation and biovermiculation g...
Brian Strader, Keith E. Schubert, Ernesto Gomez, J...