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CORR
2010
Springer
105views Education» more  CORR 2010»
15 years 3 months ago
On Designing Multicore-aware Simulators for Biological Systems
The stochastic simulation of biological systems is an increasingly popular technique in bioinformatics. It often is an enlightening technique, which may however result in being com...
Marco Aldinucci, Mario Coppo, Ferruccio Damiani, M...
AUSAI
2008
Springer
15 years 8 months ago
Propositionalisation of Profile Hidden Markov Models for Biological Sequence Analysis
Hidden Markov Models are a widely used generative model for analysing sequence data. A variant, Profile Hidden Markov Models are a special case used in Bioinformatics to represent,...
Stefan Mutter, Bernhard Pfahringer, Geoffrey Holme...
AO
2008
85views more  AO 2008»
15 years 6 months ago
GFO-Bio: A biological core ontology
Abstract. The rapid increase in the number and use of biological ontologies necessitates developing systems for their integration. In this paper we present a core ontology for biol...
Robert Hoehndorf, Frank Loebe, Roberto Poli, Heinr...
KDD
2008
ACM
206views Data Mining» more  KDD 2008»
16 years 6 months ago
Identifying biologically relevant genes via multiple heterogeneous data sources
Selection of genes that are differentially expressed and critical to a particular biological process has been a major challenge in post-array analysis. Recent development in bioin...
Zheng Zhao, Jiangxin Wang, Huan Liu, Jieping Ye, Y...
BMCBI
2007
153views more  BMCBI 2007»
15 years 6 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...