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DNA
2009
Springer
120views Bioinformatics» more  DNA 2009»
16 years 22 days ago
Strand Algebras for DNA Computing
We present a process algebra for DNA computing, discussing compilation of other formal systems into the algebra, and compilation of the algebra into DNA structures.
Luca Cardelli
BIBE
2007
IEEE
113views Bioinformatics» more  BIBE 2007»
16 years 16 days ago
Quantitative and Probabilistic Modeling in Pathway Logic
—This paper presents a study of possible extensions of Pathway Logic to represent and reason about semiquantitative and probabilistic aspects of biological processes. The underly...
Alessandro Abate, Yu Bai, Nathalie Sznajder, Carol...
EMISA
2002
Springer
15 years 6 months ago
The biology Petri net markup language
: In this paper a proposal for the Biology Petri Net Markup Language (BioPNML) is presented. The concepts and terminology of the interchange format as well as its syntax that is ba...
Ming Chen, Andreas Freier, Jacob Köhler, Alex...
CSB
2003
IEEE
153views Bioinformatics» more  CSB 2003»
15 years 11 months ago
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks
We propose a statistical method for estimating a gene network based on Bayesian networks from microarray gene expression data together with biological knowledge including protein-...
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke...
DILS
2006
Springer
15 years 9 months ago
The Distributed Annotation System for Integration of Biological Data
The Distributed Annotation System (DAS) is a protocol for sharing of biological data which allows for dynamical data integration. It has become widely used in both the genome and p...
Andreas Prlic, Ewan Birney, Tony Cox, Thomas A. Do...