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BMCBI
2006
114views more  BMCBI 2006»
15 years 6 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
BMCBI
2006
143views more  BMCBI 2006»
15 years 6 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
MMS
2008
15 years 6 months ago
Semantic interactive image retrieval combining visual and conceptual content description
We address the challenge of semantic gap reduction for image retrieval through an improved SVM-based active relevance feedback framework, together with a hybrid visual and concept...
Marin Ferecatu, Nozha Boujemaa, Michel Crucianu
IR
2007
15 years 6 months ago
Restricted inflectional form generation in management of morphological keyword variation
Word form normalization through lemmatization or stemming is a standard procedure in information retrieval because morphological variation needs to be accounted for and several la...
Kimmo Kettunen, Eija Airio, Kalervo Järvelin
BMCBI
2005
142views more  BMCBI 2005»
15 years 6 months ago
High performance workflow implementation for protein surface characterization using grid technology
Background: This study concerns the development of a high performance workflow that, using grid technology, correlates different kinds of Bioinformatics data, starting from the ba...
Ivan Merelli, Giulia Morra, Daniele D'Agostino, An...