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BMCBI
2006
113views more  BMCBI 2006»
15 years 6 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
RECOMB
2007
Springer
16 years 6 months ago
A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements
Abstract. An important problem in biology is to understand correspondences between mRNA microarray levels and mass spectrometry peptide counts. Recently, a compendium of mRNA expre...
Anitha Kannan, Andrew Emili, Brendan J. Frey
IJMI
2007
86views more  IJMI 2007»
15 years 6 months ago
Using argumentation to extract key sentences from biomedical abstracts
s from Biomedical Abstracts Patrick Rucha , Celia Boyer c , Christine Chichesterb , Imad Tbahritiab Antoine Geissbühlera , Paul Fabrya , Julien Gobeilla , Violaine Pilletab , Diet...
Patrick Ruch, Célia Boyer, Christine Chiche...
BIOCOMP
2006
15 years 7 months ago
Computational Inference of Compound-induced Anti-inflammatory Effects Across Time in an Adjuvant-induced Arthritis Rat Model
A number of diseases, such as arthritis and cardiovascular disorders impacting the lives of many people have strong inflammatory components. To elucidate the antiinflammatory mecha...
Jing Yu, Gabriel Helmlinger, Muriel Saulnier, Anna...
BIOINFORMATICS
2007
66views more  BIOINFORMATICS 2007»
15 years 6 months ago
Gene expression network analysis and applications to immunology
We address the problem of using expression data and prior biological knowledge to identify differentially expressed pathways or groups of genes. Following an idea of Ideker et al...
Serban Nacu, Rebecca Critchley-Thorne, Peter Lee, ...