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NAR
2002
132views more  NAR 2002»
15 years 6 months ago
euGenes: a eukaryote genome information system
euGenes is a genome information system and database that provides a common summary of eukaryote genes and genomes, at web site http://iubio.bio.indiana.edu/eugenes/. Seven popular...
Donald G. Gilbert
ALMOB
2006
106views more  ALMOB 2006»
15 years 6 months ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
ESANN
2006
15 years 7 months ago
Cluster detection algorithm in neural networks
Complex networks have received much attention in the last few years, and reveal global properties of interacting systems in domains like biology, social sciences and technology. O...
David Meunier, Hélène Paugam-Moisy
BMCBI
2004
142views more  BMCBI 2004»
15 years 6 months ago
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
Background: Microarray and other high-throughput technologies are producing large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed...
Bing Zhang, Denise Schmoyer, Stefan Kirov, Jay Sno...
BMCBI
2011
14 years 10 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes