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POPL
2004
ACM
16 years 6 months ago
A logic you can count on
We prove the decidability of the quantifier-free, static fragment of ambient logic, with composition adjunct and iteration, which corresponds to a kind of regular expression langu...
Silvano Dal-Zilio, Denis Lugiez, Charles Meyssonni...
RECOMB
2008
Springer
16 years 6 months ago
Duplication Mechanism and Disruptions in Flanking Regions Influence the Fate of Mammalian Gene Duplicates
Here we identify duplicated genes in five mammalian genomes and classify these duplicates based on the mechanisms by which they were generated. Retrotransposition accounts for at l...
Paul Ryvkin, Jin Jun, Edward Hemphill, Craig Nelso...
RECOMB
2006
Springer
16 years 6 months ago
Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction
We present a model for predicting HLA class I restricted CTL epitopes. In contrast to almost all other work in this area, we train a single model on epitopes from all HLA alleles a...
David Heckerman, Carl Myers Kadie, Jennifer Listga...
RECOMB
2002
Springer
16 years 6 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
CADE
2006
Springer
16 years 6 months ago
Automatic Construction and Verification of Isotopy Invariants
Abstract. We extend our previous study of the automatic construction of isomorphic classification theorems for algebraic domains by considering the isotopy equivalence relation. Is...
Volker Sorge, Andreas Meier, Roy L. McCasland, Sim...