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BMCBI
2008
146views more  BMCBI 2008»
15 years 6 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
CORR
2008
Springer
98views Education» more  CORR 2008»
15 years 6 months ago
Sparse Recovery by Non-convex Optimization -- Instance Optimality
In this note, we address the theoretical properties of p, a class of compressed sensing decoders that rely on p minimization with p (0, 1) to recover estimates of sparse and compr...
Rayan Saab, Özgür Yilmaz
187
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DAM
2010
137views more  DAM 2010»
15 years 6 months ago
H-join decomposable graphs and algorithms with runtime single exponential in rankwidth
We introduce H -join decompositions of graphs, indexed by a fixed bipartite graph H . These decompositions are based on a graph operation that we call H -join, which adds edges be...
Binh-Minh Bui-Xuan, Jan Arne Telle, Martin Vatshel...
BMCBI
2007
173views more  BMCBI 2007»
15 years 6 months ago
Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression data
Background: Classification studies using gene expression datasets are usually based on small numbers of samples and tens of thousands of genes. The selection of those genes that a...
Malik Yousef, Segun Jung, Louise C. Showe, Michael...
JPDC
2007
167views more  JPDC 2007»
15 years 6 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...