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CPHYSICS
2008
123views more  CPHYSICS 2008»
15 years 6 months ago
wannier90: A tool for obtaining maximally-localised Wannier functions
We present wannier90, a program for calculating maximally-localised Wannier functions (MLWF) from a set of Bloch energy bands that may or may not be attached to or mixed with othe...
Arash A. Mostofi, Jonathan R. Yates, Young-Su Lee,...
APIN
2006
90views more  APIN 2006»
15 years 6 months ago
AgentTeamwork: Coordinating grid-computing jobs with mobile agents
AgentTeamwork is a grid-computing middleware system that dispatches a collection of mobile agents to coordinate a user job over remote computing nodes in a decentralized manner. I...
Munehiro Fukuda, Koichi Kashiwagi, Shin-ya Kobayas...
BMCBI
2006
205views more  BMCBI 2006»
15 years 6 months ago
Application of Petri net based analysis techniques to signal transduction pathways
Background: Signal transduction pathways are usually modelled using classical quantitative methods, which are based on ordinary differential equations (ODEs). However, some diffic...
Andrea Sackmann, Monika Heiner, Ina Koch
BMCBI
2006
141views more  BMCBI 2006»
15 years 6 months ago
Visual setup of logical models of signaling and regulatory networks with ProMoT
Background: The analysis of biochemical networks using a logical (Boolean) description is an important approach in Systems Biology. Recently, new methods have been proposed to ana...
Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca ...
BMCBI
2006
120views more  BMCBI 2006»
15 years 6 months ago
The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy
Background: In the fly Drosophila melanogaster, new genetic, physiological, molecular and behavioral techniques for the functional analysis of the brain are rapidly accumulating. ...
Arnim Jenett, Johannes E. Schindelin, Martin Heise...
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