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CCGRID
2007
IEEE
16 years 27 days ago
Exploiting Lustre File Joining for Effective Collective IO
Lustre is a parallel file system that presents high aggregated IO bandwidth by striping file extents across many storage devices. However, our experiments indicate excessively wid...
Weikuan Yu, Jeffrey S. Vetter, Shane Canon, Song J...
CIBCB
2007
IEEE
16 years 27 days ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
HPDC
2007
IEEE
16 years 27 days ago
A fast topology inference: a building block for network-aware parallel processing
Adapting to the network is the key to achieving high performance for communication-intensive applications, including scientific computing, data intensive computing, and multicast...
Tatsuya Shirai, Hideo Saito, Kenjiro Taura
IEEEPACT
2007
IEEE
16 years 26 days ago
Performance Portable Optimizations for Loops Containing Communication Operations
Effective use of communication networks is critical to the performance and scalability of parallel applications. Partitioned Global Address Space languages like UPC bring the pro...
Costin Iancu, Wei Chen, Katherine A. Yelick
IRI
2007
IEEE
16 years 26 days ago
The Software Reuse Working Group: A Case Study in Fostering Reuse
Packaging software assets for reuse can improve the potential for others to adopt the software. Packaging the software with appropriate documentation and other resources can facil...
Ryan Gerard, Robert R. Downs, James J. Marshall, R...
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