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ALMOB
2008
131views more  ALMOB 2008»
15 years 7 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
ALMOB
2008
160views more  ALMOB 2008»
15 years 7 months ago
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
Christian Rödelsperger, Christoph Dieterich
AMAI
2008
Springer
15 years 7 months ago
Set based logic programming
In a previous paper [BMR01], the authors showed that the mechanism underlying Logic Programming can be extended to handle the situation where the atoms are interpreted as subsets o...
Howard A. Blair, Victor W. Marek, Jeffrey B. Remme...
ALGORITHMICA
2007
132views more  ALGORITHMICA 2007»
15 years 7 months ago
On the Feasibility of Time Estimation under Isolation Conditions in Wireless Sensor Networks
We study the problem of providing a sensor with an accurate estimate of the time, from a novel perspective which is complementary to the well-studied clock synchronization problem....
Daniela Tulone
ALMOB
2007
111views more  ALMOB 2007»
15 years 7 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
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