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BMCBI
2008
105views more  BMCBI 2008»
15 years 6 months ago
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Background: Mining gene patterns that are common to multiple genomes is an important biological problem, which can lead us to novel biological insights. When family classification...
Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yan...
BMCBI
2008
101views more  BMCBI 2008»
15 years 6 months ago
Compressing DNA sequence databases with coil
Background: Publicly available DNA sequence databases such as GenBank are large, and are growing at an exponential rate. The sheer volume of data being dealt with presents serious...
W. Timothy J. White, Michael D. Hendy
BMCBI
2007
104views more  BMCBI 2007»
15 years 6 months ago
A comparison of Affymetrix gene expression arrays
Background: Affymetrix GeneChips™ are an important tool in many facets of biological research. Recently, notable design changes to the chips have been made. In this study, we us...
Mark D. Robinson, Terence P. Speed
BMCBI
2008
126views more  BMCBI 2008»
15 years 6 months ago
Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems
Background: The Signal-to-Noise-Ratio (SNR) is often used for identification of biomarkers for two-class problems and no formal and useful generalization of SNR is available for m...
Yu-Shuen Tsai, Chin-Teng Lin, George C. Tseng, I-F...
CCE
2008
15 years 6 months ago
Experiments and CFD simulation of ferrous biooxidation in a bubble column bioreactor
In the present attempt a set of experiments and a 3D simulation using a commercially available computational fluid dynamics package (FLUENT) were adopted to investigate complex beh...
S. M. Mousavi, A. Jafari, S. Yaghmaei, M. Vossough...