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DDEP
2000
Springer
15 years 11 months ago
GODDAG: A Data Structure for Overlapping Hierarchies
Abstract. Notations like SGML and XML represent document structures using tree structures; while this is in general a step forward from earlier systems, it creates certain difficul...
C. M. Sperberg-McQueen, Claus Huitfeldt
BMCBI
2007
143views more  BMCBI 2007»
15 years 7 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
BMCBI
2006
120views more  BMCBI 2006»
15 years 6 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner
ECIR
2009
Springer
15 years 4 months ago
Refining Keyword Queries for XML Retrieval by Combining Content and Structure
Abstract. The structural heterogeneity and complexity of XML repositories makes query formulation challenging for users who have little knowledge of XML. To assist its users, an XM...
Desislava Petkova, W. Bruce Croft, Yanlei Diao
COMPLIFE
2005
Springer
16 years 11 days ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert