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» Applications of integer relation algorithms
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BMCBI
2006
139views more  BMCBI 2006»
15 years 6 months ago
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
Background: Multiple sequence alignment (MSA) is a useful tool in bioinformatics. Although many MSA algorithms have been developed, there is still room for improvement in accuracy...
Shinsuke Yamada, Osamu Gotoh, Hayato Yamana
BMCBI
2010
185views more  BMCBI 2010»
15 years 1 months ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
STACS
2007
Springer
16 years 17 days ago
A Deterministic Algorithm for Summarizing Asynchronous Streams over a Sliding Window
We consider the problem of maintaining aggregates over recent elements of a massive data stream. Motivated by applications involving network data, we consider asynchronous data str...
Costas Busch, Srikanta Tirthapura
BMCBI
2011
14 years 10 months ago
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
Background: Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-n...
Mattia C. F. Prosperi, Luciano Prosperi, Alessandr...
CSB
2003
IEEE
15 years 11 months ago
An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features
This paper presents a novel algorithm for identification and functional characterization of “key” genome features responsible for a particular biochemical process of interest....
Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F...