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» Applications of a Color-Naming Database
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BMCBI
2007
89views more  BMCBI 2007»
15 years 6 months ago
msmsEval: tandem mass spectral quality assignment for high-throughput proteomics
Background: In proteomics experiments, database-search programs are the method of choice for protein identification from tandem mass spectra. As amino acid sequence databases grow...
Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Car...
CCR
2008
76views more  CCR 2008»
15 years 6 months ago
WebClass: adding rigor to manual labeling of traffic anomalies
Despite the flurry of anomaly-detection papers in recent years, effective ways to validate and compare proposed solutions have remained elusive. We argue that evaluating anomaly d...
Haakon Ringberg, Augustin Soule, Jennifer Rexford
BMCBI
2006
184views more  BMCBI 2006»
15 years 6 months ago
PathSys: integrating molecular interaction graphs for systems biology
Background: The goal of information integration in systems biology is to combine information from a number of databases and data sets, which are obtained from both high and low th...
Michael Baitaluk, Xufei Qian, Shubhada Godbole, Al...
BMCBI
2006
143views more  BMCBI 2006»
15 years 6 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
BMCBI
2006
139views more  BMCBI 2006»
15 years 6 months ago
Integrated functional visualization of eukaryotic genomes
Background: Increasing amounts of data from large scale whole genome analysis efforts demands convenient tools for manipulation, visualization and investigation. Whole genome plot...
Rohit Ghai, Hannes Lindemann, Trinad Chakraborty