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TC
2010
15 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
ASWEC
2006
IEEE
16 years 28 days ago
Preventing SQL Injection Attacks in Stored Procedures
An SQL injection attack targets interactive web applications that employ database services. These applications accept user inputs and use them to form SQL statements at runtime. D...
Ke Wei, Muthusrinivasan Muthuprasanna, Suraj Kotha...
BMCBI
2005
292views more  BMCBI 2005»
15 years 6 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
CORR
2000
Springer
104views Education» more  CORR 2000»
15 years 6 months ago
ATLAS: A flexible and extensible architecture for linguistic annotation
We describe a formal model for annotating linguistic artifacts, from which we derive an application programming interface (API) to a tools for manipulating these annotations. The ...
Steven Bird, David Day, John S. Garofolo, John Hen...
CORR
2002
Springer
87views Education» more  CORR 2002»
15 years 6 months ago
Rerendering Semantic Ontologies: Automatic Extensions to UMLS through Corpus Analytics
In this paper, we discuss the utility and deficiencies of existing ontology resources for a number of language processing applications. We describe a technique for increasing the ...
James Pustejovsky, Anna Rumshisky, José M. ...