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2009
ACM
16 years 1 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
CLUSTER
2009
IEEE
16 years 1 months ago
Analyzing massive astrophysical datasets: Can Pig/Hadoop or a relational DBMS help?
Abstract— As the datasets used to fuel modern scientific discovery grow increasingly large, they become increasingly difficult to manage using conventional software. Parallel d...
Sarah Loebman, Dylan Nunley, YongChul Kwon, Bill H...
IPPS
2009
IEEE
16 years 1 months ago
Singular value decomposition on GPU using CUDA
Linear algebra algorithms are fundamental to many computing applications. Modern GPUs are suited for many general purpose processing tasks and have emerged as inexpensive high per...
Sheetal Lahabar, P. J. Narayanan
IPPS
2009
IEEE
16 years 1 months ago
Understanding the design trade-offs among current multicore systems for numerical computations
In this paper, we empirically evaluate fundamental design trade-offs among the most recent multicore processors and accelerator technologies. Our primary aim is to aid application...
Seunghwa Kang, David A. Bader, Richard W. Vuduc
CLUSTER
2008
IEEE
16 years 1 months ago
Towards an understanding of the performance of MPI-IO in Lustre file systems
—Lustre is becoming an increasingly important file system for large-scale computing clusters. The problem, however, is that many data-intensive applications use MPI-IO for their ...
Jeremy Logan, Phillip M. Dickens