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RECOMB
2007
Springer
16 years 7 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
RECOMB
2006
Springer
16 years 7 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
RECOMB
2004
Springer
16 years 7 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
VLDB
2006
ACM
124views Database» more  VLDB 2006»
16 years 6 months ago
Query optimization in XML structured-document databases
While the information published in the form of XML-compliant documents keeps fast mounting up, efficient and effective query processing and optimization for XML have now become mor...
Dunren Che, Karl Aberer, M. Tamer Özsu
VLDB
2008
ACM
127views Database» more  VLDB 2008»
16 years 6 months ago
Delay aware querying with Seaweed
Large highly distributed data sets are poorly supported by current query technologies. Applications such as endsystembased network management are characterized by data stored on l...
Dushyanth Narayanan, Austin Donnelly, Richard Mort...
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