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» Analyzing the Uses of a Software Modeling Tool
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BMCBI
2007
129views more  BMCBI 2007»
15 years 6 months ago
Integrated network reconstruction, visualization and analysis using YANAsquare
Background: Modeling of metabolic networks includes tasks such as network assembly, network overview, calculation of metabolic fluxes and testing the robustness of the network. Re...
Roland Schwarz, Chunguang Liang, Christoph Kaleta,...
ICNC
2005
Springer
16 years 3 days ago
A Game-Theoretic Approach to Competitive Learning in Self-Organizing Maps
Abstract. Self-Organizing Maps (SOM) is a powerful tool for clustering and discovering patterns in data. Competitive learning in the SOM training process focusses on finding a neu...
Joseph P. Herbert, Jingtao Yao
BMCBI
2006
147views more  BMCBI 2006»
15 years 6 months ago
A case study in pathway knowledgebase verification
Background: Biological databases and pathway knowledgebases are proliferating rapidly. We are developing software tools for computer-aided hypothesis design and evaluation, and we...
Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff
DAC
2005
ACM
15 years 8 months ago
How accurately can we model timing in a placement engine?
This paper presents a novel placement algorithm for timing optimization based on a new and powerful concept, which we term differential timing analysis. Recognizing that accurate ...
Amit Chowdhary, Karthik Rajagopal, Satish Venkates...
GPCE
2007
Springer
16 years 23 days ago
A type-centric framework for specifying heterogeneous, large-scale, component-oriented, architectures
Maintaining integrity, consistency, and enforcing conformance in architectures of large-scale systems requires specification and enforcement of many different forms of structural...
Georg Jung, John Hatcliff