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BMCBI
2004
323views more  BMCBI 2004»
15 years 6 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
EPEW
2009
Springer
16 years 1 months ago
Modelling Zoned RAID Systems Using Fork-Join Queueing Simulation
Abstract. RAID systems are ubiquitously deployed in storage environments, both as standalone storage solutions and as fundamental components of virtualised storage platforms. Accur...
Abigail S. Lebrecht, Nicholas J. Dingle, William J...
ISPD
2000
ACM
86views Hardware» more  ISPD 2000»
15 years 11 months ago
Simulating frequency-dependent current distribution for inductance modeling of on-chip copper interconnects
500+ MHz designs using deep-submicron (DSM) copper interconnects require accurate and efficient modeling of cladding-metals’ frequency-dependent impedance [1]. In this paper, fo...
Li-Fu Chang, Keh-Jeng Chang, Robert Mathews
JCB
2002
131views more  JCB 2002»
15 years 6 months ago
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The reg...
Hidde de Jong
CSB
2005
IEEE
128views Bioinformatics» more  CSB 2005»
15 years 8 months ago
Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes
In our effort to elucidate the systems biology of the model organism, Escherichia coli, we have developed a mathematical model that simulates the allosteric regulation for threoni...
Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, ...