Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
Background: A transcriptional regulatory module (TRM) is a set of genes that is regulated by a common set of transcription factors (TFs). By organizing the genome into TRMs, a liv...
: A local search algorithm operating on an instance of a Boolean constraint satisfaction problem (in particular, k-SAT) can be viewed as a stochastic process traversing successive ...
Different from traditional association-rule mining, a new paradigm called Ratio Rule (RR) was proposed recently. Ratio rules are aimed at capturing the quantitative association kno...
Jun Yan, Ning Liu, Qiang Yang, Benyu Zhang, QianSh...
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...