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BMCBI
2008
138views more  BMCBI 2008»
15 years 7 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
COMGEO
2010
ACM
15 years 7 months ago
Exact join detection for convex polyhedra and other numerical abstractions
r Numerical Abstractions6 Roberto Bagnaraa , Patricia M. Hillb , Enea Zaffanellaa aDepartment of Mathematics, University of Parma, Italy bSchool of Computing, University of Leeds, ...
Roberto Bagnara, Patricia M. Hill, Enea Zaffanella
BMCBI
2006
114views more  BMCBI 2006»
15 years 7 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
BMCBI
2006
137views more  BMCBI 2006»
15 years 7 months ago
A classification-based framework for predicting and analyzing gene regulatory response
Background: We have recently introduced a predictive framework for studying gene transcriptional regulation in simpler organisms using a novel supervised learning algorithm called...
Anshul Kundaje, Manuel Middendorf, Mihir Shah, Chr...
BMCBI
2007
144views more  BMCBI 2007»
15 years 6 months ago
Automatic delineation of malignancy in histopathological head and neck slides
Background: Histopathology, which is one of the most important routines of all laboratory procedures used in pathology, is decisive for the diagnosis of cancer. Experienced histop...
Mutlu Mete, Xiaowei Xu, Chun-Yang Fan, Gal Shafirs...
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