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» Analysis and design of sequencing rules for car sequencing
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APBC
2004
108views Bioinformatics» more  APBC 2004»
15 years 7 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
IPL
2002
86views more  IPL 2002»
15 years 5 months ago
A semantics of sequence diagrams
We develop a formal semantics of sequence diagrams. The semantics is given in terms of our new temporal logic, named HDTL, which is designed to specify dynamically evolving system...
Seung Mo Cho, Hyung-Ho Kim, Sung Deok Cha, Doo-Hwa...
SDM
2009
SIAM
170views Data Mining» more  SDM 2009»
16 years 3 months ago
Mining Complex Spatio-Temporal Sequence Patterns.
Mining sequential movement patterns describing group behaviour in potentially streaming spatio-temporal data sets is a challenging problem. Movements are typically noisy and often...
Florian Verhein
CANDC
2008
ACM
15 years 6 months ago
'Genome order index' should not be used for defining compositional constraints in nucleotide sequences
Background: The Z-curve is a three dimensional representation of DNA sequences proposed over a decade ago and has been extensively applied to sequence segmentation, horizontal gen...
Eran Elhaik, Dan Graur, Kresimir Josic
BMCBI
2006
121views more  BMCBI 2006»
15 years 6 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...