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» An overview of clustering methods
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BMCBI
2007
133views more  BMCBI 2007»
15 years 7 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
IDEAL
2009
Springer
15 years 11 months ago
Web Feed Clustering and Tagging Aggregator Using Topological Tree-Based Self-Organizing Maps
With the rapid and dramatic increase in web feeds published by different publishers, providers or websites via Really Simple Syndication (RSS) and Atom, users cannot be expected t...
Richard T. Freeman
EVOW
2006
Springer
15 years 10 months ago
Hierarchical Clustering, Languages and Cancer
In this paper, we introduce a novel objective function for the hierarchical clustering of data from distance matrices, a very relevant task in Bioinformatics. To test the robustnes...
Pritha Mahata, Wagner Costa, Carlos Cotta, Pablo M...
BMCBI
2006
161views more  BMCBI 2006»
15 years 6 months ago
A novel approach to phylogenetic tree construction using stochastic optimization and clustering
Background: The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational bi...
Ling Qin, Yixin Chen, Yi Pan, Ling Chen
PAMI
2007
196views more  PAMI 2007»
15 years 6 months ago
Clustering and Embedding Using Commute Times
This paper exploits the properties of the commute time between nodes of a graph for the purposes of clustering and embedding, and explores its applications to image segmentation a...
Huaijun Qiu, Edwin R. Hancock