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BMCBI
2006
171views more  BMCBI 2006»
15 years 7 months ago
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....
KDD
2002
ACM
145views Data Mining» more  KDD 2002»
16 years 7 months ago
Handling very large numbers of association rules in the analysis of microarray data
The problem of analyzing microarray data became one of important topics in bioinformatics over the past several years, and different data mining techniques have been proposed for ...
Alexander Tuzhilin, Gediminas Adomavicius
PLDI
2003
ACM
16 years 4 days ago
Predicting whole-program locality through reuse distance analysis
Profiling can accurately analyze program behavior for select data inputs. We show that profiling can also predict program locality for inputs other than profiled ones. Here loc...
Chen Ding, Yutao Zhong
BMCBI
2008
173views more  BMCBI 2008»
15 years 7 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
BMCBI
2006
127views more  BMCBI 2006»
15 years 7 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...