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BMCBI
2008
147views more  BMCBI 2008»
15 years 6 months ago
Transmembrane helix prediction using amino acid property features and latent semantic analysis
Background: Prediction of transmembrane (TM) helices by statistical methods suffers from lack of sufficient training data. Current best methods use hundreds or even thousands of f...
Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj...
CGF
2008
84views more  CGF 2008»
15 years 6 months ago
Visualizing Underwater Ocean Optics
Simulating the in-water ocean light field is a daunting task. Ocean waters are one of the richest participating media, where light interacts not only with water molecules, but wit...
Diego Gutierrez, Francisco J. Serón, Adolfo...
CORR
2010
Springer
111views Education» more  CORR 2010»
15 years 6 months ago
Submodular Maximization by Simulated Annealing
We consider the problem of maximizing a nonnegative (possibly non-monotone) submodular set function with or without constraints. Feige et al. [9] showed a 2/5-approximation for th...
Shayan Oveis Gharan, Jan Vondrák
BMCBI
2006
147views more  BMCBI 2006»
15 years 6 months ago
A case study in pathway knowledgebase verification
Background: Biological databases and pathway knowledgebases are proliferating rapidly. We are developing software tools for computer-aided hypothesis design and evaluation, and we...
Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff
BMCBI
2006
91views more  BMCBI 2006»
15 years 6 months ago
Empirical study of supervised gene screening
Background: Microarray studies provide a way of linking variations of phenotypes with their genetic causations. Constructing predictive models using high dimensional microarray me...
Shuangge Ma
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