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MSR
2006
ACM
16 years 15 days ago
Detecting similar Java classes using tree algorithms
Similarity analysis of source code is helpful during development to provide, for instance, better support for code reuse. Consider a development environment that analyzes code whi...
Tobias Sager, Abraham Bernstein, Martin Pinzger, C...
BMCBI
2005
132views more  BMCBI 2005»
15 years 6 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
RC
2007
148views more  RC 2007»
15 years 6 months ago
Computing Population Variance and Entropy under Interval Uncertainty: Linear-Time Algorithms
In statistical analysis of measurement results, it is often necessary to compute the range [V , V ] of the population variance V = 1 n · n i=1 (xi −E)2 (where E = 1 n · n i=1 ...
Gang Xiang, Martine Ceberio, Vladik Kreinovich
BMCBI
2007
128views more  BMCBI 2007»
15 years 6 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne
DAC
2005
ACM
15 years 8 months ago
On the need for statistical timing analysis
Traditional corner analysis fails to guarantee a target yield for a given performance metric. However, recently proposed solutions, in the form of statistical timing analysis, whi...
Farid N. Najm