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» An Analysis of Permutations in Arrays
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BMCBI
2007
200views more  BMCBI 2007»
15 years 6 months ago
Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
Background: Genomic deletions and duplications are important in the pathogenesis of diseases, such as cancer and mental retardation, and have recently been shown to occur frequent...
Ágnes Baross, Allen D. Delaney, H. Irene Li...
IRREGULAR
1995
Springer
15 years 10 months ago
Run-Time Parallelization of Irregular DOACROSS Loops
Dependencies between iterations of loop structures cannot always be determined at compile-time because they may depend on input data which is known only at run-time. A prime examp...
V. Prasad Krothapalli, Thulasiraman Jeyaraman, Mar...
BIOCOMP
2007
15 years 7 months ago
xMAN: extreme MApping of oligoNucleotides
Background: The ability to rapidly map millions of oligonucleotide fragments to a reference genome is crucial to many high throughput genomic technologies. Results: We propose an ...
Wei Li, Jason S. Carroll, Myles Brown, X. Shirley ...
BMCBI
2004
131views more  BMCBI 2004»
15 years 6 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...
ISI
2005
Springer
15 years 11 months ago
Modeling and Multiway Analysis of Chatroom Tensors
This work identifies the limitations of n-way data analysis techniques in multidimensional stream data, such as Internet chatroom communications data, and establishes a link betwe...
Evrim Acar, Seyit Ahmet Çamtepe, Mukkai S. ...