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» An Analysis of Permutations in Arrays
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SIAMCOMP
1998
113views more  SIAMCOMP 1998»
15 years 6 months ago
Two-Dimensional Periodicity in Rectangular Arrays
Abstract. String matching is rich with a variety of algorithmic tools. In contrast, multidimensional matching has had a rather sparse set of techniques. This paper presents a new a...
Amihood Amir, Gary Benson
ICCAD
2003
IEEE
170views Hardware» more  ICCAD 2003»
16 years 3 months ago
Evaluation of Placement Techniques for DNA Probe Array Layout
DNA probe arrays have emerged as a core genomic technology that enables cost-effective gene expression monitoring, mutation detection, single nucleotide polymorphism analysis and ...
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu ...
BMCBI
2010
121views more  BMCBI 2010»
15 years 1 months ago
G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration
Background: The brightness of the probe spots on expression microarrays intends to measure the abundance of specific mRNA targets. Probes with runs of at least three guanines (G) ...
Mario Fasold, Peter F. Stadler, Hans Binder
BMCBI
2006
88views more  BMCBI 2006»
15 years 6 months ago
Effect of various normalization methods on Applied Biosystems expression array system data
Background: DNA microarray technology provides a powerful tool for characterizing gene expression on a genome scale. While the technology has been widely used in discovery-based m...
Catalin C. Barbacioru, Yulei Wang, Roger D. Canale...
BMCBI
2011
14 years 10 months ago
Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
Background: Copy number aberrations (CNAs) are an important molecular signature in cancer initiation, development, and progression. However, these aberrations span a wide range of...
Youngmi Hur, Hyunju Lee