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» An Analysis of Permutations in Arrays
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BMCBI
2010
101views more  BMCBI 2010»
15 years 6 months ago
Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model
Background: Copy number variants (CNVs) have been demonstrated to occur at a high frequency and are now widely believed to make a significant contribution to the phenotypic variat...
Zhengdong D. Zhang, Mark B. Gerstein
BMCBI
2010
116views more  BMCBI 2010»
15 years 6 months ago
permGPU: Using graphics processing units in RNA microarray association studies
Background: Many analyses of microarray association studies involve permutation, bootstrap resampling and crossvalidation, that are ideally formulated as embarrassingly parallel c...
Ivo D. Shterev, Sin-Ho Jung, Stephen L. George, Ko...
BMCBI
2011
14 years 9 months ago
A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data
Background: Mosaicism for copy number and copy neutral chromosomal rearrangements has been recently identified as a relatively common source of genetic variation in the normal pop...
Juan R. González, Benjamin Rodriguez-Santia...
ICASSP
2008
IEEE
16 years 19 days ago
Generic and typical ranks of three-way arrays
The concept of tensor rank, introduced in the twenties, has been popularized at the beginning of the seventies. This has allowed to carry out Factor Analysis on arrays with more t...
Pierre Comon, Jos M. F. ten Berge
CPM
2007
Springer
134views Combinatorics» more  CPM 2007»
15 years 10 months ago
Efficient Computation of Substring Equivalence Classes with Suffix Arrays
This paper considers enumeration of substring equivalence classes introduced by Blumer et al. [1]. They used the equivalence classes to define an index structure called compact dir...
Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Bannai,...