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SAS
2009
Springer
281views Formal Methods» more  SAS 2009»
16 years 6 months ago
A Verifiable, Control Flow Aware Constraint Analyzer for Bounds Check Elimination
The Java programming language requires that out-of-bounds array accesses produce runtime exceptions. In general, this requires a dynamic bounds check each time an array element is...
David Niedzielski, Jeffery von Ronne, Andreas Gamp...
IPPS
2005
IEEE
15 years 12 months ago
Automatic Support for Irregular Computations in a High-Level Language
The problem of writing high performance parallel applications becomes even more challenging when irregular, sparse or adaptive methods are employed. In this paper we introduce com...
Jimmy Su, Katherine A. Yelick
BMCBI
2007
97views more  BMCBI 2007»
15 years 6 months ago
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets
Background: Array comparative genome hybridization (aCGH) provides information about genomic aberrations. Alterations in the DNA copy number may cause the cell to malfunction, lea...
Carmen Lai, Hugo M. Horlings, Marc J. van de Vijve...
BMCBI
2008
98views more  BMCBI 2008»
15 years 6 months ago
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Background: Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aber...
Johan Staaf, Johan Vallon-Christersson, David Lind...
BMCBI
2006
128views more  BMCBI 2006»
15 years 6 months ago
Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...