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RECOMB
2009
Springer
16 years 7 months ago
Lifting Prediction to Alignment of RNA Pseudoknots
Prediction and alignment of RNA pseudoknot structures are NP-hard. Nevertheless, several efficient prediction algorithms by dynamic programming have been proposed for restricted cl...
Mathias Möhl, Rolf Backofen, Sebastian Will
BIBE
2007
IEEE
174views Bioinformatics» more  BIBE 2007»
16 years 27 days ago
Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings
—We investigate the k-LCS problem that is finding a longest common subsequence (LCS) for k given input strings. The problem is known to have practical solutions for k = 2, but f...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
IJCAI
1989
15 years 7 months ago
An Approximate Solver for Symbolic Equations
This paper describes a program, called NEWTON, that finds approximate symbolic solutions to parameterized equations in one variable. N E W T O N derives an initial approximation b...
Elisha Sacks
BMCBI
2010
86views more  BMCBI 2010»
15 years 6 months ago
Fast motif recognition via application of statistical thresholds
Background: Improving the accuracy and efficiency of motif recognition is an important computational challenge that has application to detecting transcription factor binding sites...
Christina Boucher, James King
CEC
2007
IEEE
15 years 8 months ago
Hybrid optimization using DIRECT, GA, and SQP for global exploration
— As there are many good optimization algorithms each with its own characteristics, it is very difficult to choose the best method for optimization problems. Thus, it is importa...
Satoru Hiwa, Tomoyuki Hiroyasu, Mitsunori Miki