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BMCBI
2006
169views more  BMCBI 2006»
15 years 6 months ago
Finding biological process modifications in cancer tissues by mining gene expression correlations
Background: Through the use of DNA microarrays it is now possible to obtain quantitative measurements of the expression of thousands of genes from a biological sample. This techno...
Giacomo Gamberoni, Sergio Storari, Stefano Volinia
BMCBI
2007
142views more  BMCBI 2007»
15 years 6 months ago
Predicting and improving the protein sequence alignment quality by support vector regression
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Minho Lee, Chan-seok Jeong, Dongsup Kim
CORR
2007
Springer
155views Education» more  CORR 2007»
15 years 6 months ago
Low-density graph codes that are optimal for source/channel coding and binning
We describe and analyze the joint source/channel coding properties of a class of sparse graphical codes based on compounding a low-density generator matrix (LDGM) code with a low-...
Martin J. Wainwright, Emin Martinian
JACM
2006
134views more  JACM 2006»
15 years 6 months ago
Online algorithms for market clearing
In this article, we study the problem of online market clearing where there is one commodity in the market being bought and sold by multiple buyers and sellers whose bids arrive an...
Avrim Blum, Tuomas Sandholm, Martin Zinkevich
BMCBI
2005
162views more  BMCBI 2005»
15 years 6 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes