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BMCBI
2006
129views more  BMCBI 2006»
15 years 6 months ago
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Background: Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of ...
Laila A. Nahum, Matthew T. Reynolds, Zhengyuan O. ...
BMCBI
2011
14 years 10 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
CVPR
2008
IEEE
16 years 8 months ago
Simultaneous image transformation and sparse representation recovery
Sparse representation in compressive sensing is gaining increasing attention due to its success in various applications. As we demonstrate in this paper, however, image sparse rep...
Junzhou Huang, Xiaolei Huang, Dimitris N. Metaxas
BMCBI
2010
122views more  BMCBI 2010»
15 years 6 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
SC
2003
ACM
16 years 1 days ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal