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RECOMB
2005
Springer
16 years 7 months ago
An Interaction-Dependent Model for Transcription Factor Binding
Transcriptional regulation is accomplished by several transcription factor proteins that bind to specific DNA elements in the relative vicinity of the gene, and interact with each ...
Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli
RECOMB
2004
Springer
16 years 7 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
ICALP
2009
Springer
16 years 7 months ago
Correlation Clustering Revisited: The "True" Cost of Error Minimization Problems
Correlation Clustering was defined by Bansal, Blum, and Chawla as the problem of clustering a set of elements based on a possibly inconsistent binary similarity function between e...
Nir Ailon, Edo Liberty
VLDB
2003
ACM
125views Database» more  VLDB 2003»
16 years 7 months ago
THESUS: Organizing Web document collections based on link semantics
Abstract. The requirements for effective search and management of the WWW are stronger than ever. Currently Web documents are classified based on their content not taking into acco...
Maria Halkidi, Benjamin Nguyen, Iraklis Varlamis, ...
VLDB
2006
ACM
171views Database» more  VLDB 2006»
16 years 7 months ago
Grid-partition index: a hybrid method for nearest-neighbor queries in wireless location-based services
Abstract Traditional nearest-neighbor (NN) search is based on two basic indexing approaches: object-based indexing and solution-based indexing. The former is constructed based on t...
Baihua Zheng, Jianliang Xu, Wang-Chien Lee, Dik Lu...
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