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BIBE
2008
IEEE
272views Bioinformatics» more  BIBE 2008»
16 years 1 months ago
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uniï...
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara
JCSS
2006
77views more  JCSS 2006»
15 years 6 months ago
Sequential predictions based on algorithmic complexity
This paper studies sequence prediction based on the monotone Kolmogorov complexity Km=-log m, i.e. based on universal deterministic/one-part MDL. m is extremely close to Solomonof...
Marcus Hutter
ALGORITHMICA
2000
106views more  ALGORITHMICA 2000»
15 years 6 months ago
Algorithms for Sensorless Manipulation Using a Vibrating Surface
We describe a programmable apparatus that uses a vibrating surface for sensorless, nonprehensile manipulation, where parts are systematically positioned and oriented without sensor...
Karl-Friedrich Böhringer, Vivek Bhatt, Bruce ...
RAS
2000
130views more  RAS 2000»
15 years 6 months ago
Allocating optimal index positions on tool magazines using genetic algorithms
This paper presents an optimisation system software developed for the determination of optimal index positions of cutting tools on the automatic tool changer (ATC) or turret magaz...
Türkay Dereli, I. Hüseyin Filiz
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
16 years 1 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...