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BMCBI
2006
144views more  BMCBI 2006»
15 years 6 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
196
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RECOMB
2003
Springer
16 years 7 months ago
Accurate detection of very sparse sequence motifs
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Andreas Heger, Michael Lappe, Liisa Holm
SDM
2009
SIAM
170views Data Mining» more  SDM 2009»
16 years 3 months ago
Mining Complex Spatio-Temporal Sequence Patterns.
Mining sequential movement patterns describing group behaviour in potentially streaming spatio-temporal data sets is a challenging problem. Movements are typically noisy and often...
Florian Verhein
BMCBI
2006
78views more  BMCBI 2006»
15 years 6 months ago
Subfamily logos: visualization of sequence deviations at alignment positions with high information content
Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
Eric Beitz
BMCBI
2006
100views more  BMCBI 2006»
15 years 6 months ago
STAR: predicting recombination sites from amino acid sequence
Background: Designing novel proteins with site-directed recombination has enormous prospects. By locating effective recombination sites for swapping sequence parts, the probabilit...
Denis C. Bauer, Mikael Bodén, Ricarda Thier...