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CSL
2009
Springer
15 years 10 months ago
Tree-Width for First Order Formulae
We introduce tree-width for first order formulae , fotw(). We show that computing fotw is fixed-parameter tractable with parameter fotw. Moreover, we show that on classes of formul...
Isolde Adler, Mark Weyer
BMCBI
2008
95views more  BMCBI 2008»
15 years 6 months ago
PURE: A webserver for the prediction of domains in unassigned regions in proteins
Background: Protein domains are the structural and functional units of proteins. The ability to parse proteins into different domains is important for effective classification, un...
Chilamakuri C. S. Reddy, Khader Shameer, Bernard O...
BMCBI
2006
153views more  BMCBI 2006»
15 years 6 months ago
The 3of5 web application for complex and comprehensive pattern matching in protein sequences
Background: The identification of patterns in biological sequences is a key challenge in genome analysis and in proteomics. Frequently such patterns are complex and highly variabl...
Markus Seiler, Alexander Mehrle, Annemarie Poustka...
BMCBI
2005
109views more  BMCBI 2005»
15 years 6 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
TPDS
2008
199views more  TPDS 2008»
15 years 6 months ago
DCMP: A Distributed Cycle Minimization Protocol for Peer-to-Peer Networks
Abstract-- Broadcast-based Peer-to-Peer (P2P) networks, including flat (e.g., Gnutella) and two-layer super-peer implementations (e.g., Kazaa), are extremely popular nowadays due t...
Zhenzhou Zhu, Panos Kalnis, Spiridon Bakiras