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BMCBI
2007
113views more  BMCBI 2007»
15 years 6 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
BMCBI
2008
126views more  BMCBI 2008»
15 years 6 months ago
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Background: Obtaining physiological insights from microarray experiments requires computational techniques that relate gene expression data to functional information. Traditionall...
Anne M. Denton, Jianfei Wu, Megan K. Townsend, Pre...
CNSR
2006
IEEE
136views Communications» more  CNSR 2006»
16 years 6 days ago
Combining Petri Nets and ns-2: A Hybrid Method for Analysis and Simulation
Network protocol performance and evaluation study is often carried out using a couple of widely used simulation toolkits, such as ns-2 and OPNET. These toolkits usually contain ma...
Qiang Ye, Mike H. MacGregor
JCC
2008
111views more  JCC 2008»
15 years 6 months ago
Highly accurate biomolecular electrostatics in continuum dielectric environments
: Implicit solvent models based on the Poisson-Boltzmann (PB) equation are frequently used to describe the interactions of a biomolecule with its dielectric continuum environment. ...
Y. C. Zhou, Michael Feig, G. W. Wei
BMCBI
2008
187views more  BMCBI 2008»
15 years 6 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...